Amazon Selling

Top 10 FBA Inventory Discrepancies That Cost Sellers Money

Mar 7, 2025

Amazon FBA sellers lose 1% to 3% of inventory annually to discrepancies like lost items, damaged products, and fee errors. For a $1M business, that’s $10,000–$30,000 gone every year. The good news? Many of these losses are recoverable if you act quickly and stay organized.

Key Issues to Watch Out For:

  1. Missing Items During Shipping – Lost inventory during transit.

  2. Damaged Products in Warehouses – Mishandling or poor storage.

  3. Lost Items in Warehouses – Misplaced or unaccounted stock.

  4. Untracked Customer Returns – Refunds without items being returned.

  5. Unauthorized Disposal – Items disposed of without your consent.

  6. FBA Fee Errors – Overcharges from incorrect dimensions or weights.

  7. Wrong Size and Weight Charges – Inflated fees from measurement mistakes.

  8. Mixed Inventory Problems – Counterfeit or low-quality items from commingling.

  9. Missing Multi-Channel Orders – Tracking issues across platforms.

  10. Stuck Inventory – Unsellable items due to listing or pricing errors.

Quick Action Plan:

  • Document Everything: Keep records of shipments, sizes, and weights.

  • Audit Regularly: Use tools like Amazon reports or automated services.

  • File Claims Fast: Stay within Amazon’s claim windows (e.g., 9 months for lost items).

  • Prevent Issues: Fix packaging, labels, and inventory tracking systems.

Why It Matters:

Recovering lost funds can save thousands of dollars annually. Tools like Refunzo automate reconciliation and make it easier to claim reimbursements. Don’t leave money on the table - act now to protect your profits.

How to Request Reimbursements from Amazon FBA for Lost & Damaged Units

1. Missing Items During Shipping to Amazon

When inventory goes missing during transit to Amazon FBA centers, it can hurt your business through lost sales and reduced inventory value. For example, if you ship 1,000 units but Amazon only logs 980, those 20 missing units mean lost revenue. Here's how to protect your shipments and simplify reimbursement claims.

Document Everything Before Shipping

To minimize issues, keep detailed records of your shipments:

  • Take photos of the boxes.

  • Record the exact product quantities.

  • Save all shipping labels and tracking numbers.

  • Hold onto packing lists that detail the contents.

Actively Track Shipments

Use the Shipping Queue in Seller Central to stay updated on your shipment's progress. The Shipment Events tab provides a clear view of your inventory's journey, from shipment creation to delivery.

Reconciliation Process

If items go missing, you'll need specific documents to start the reconciliation process:

  • Shipment ID

  • Proof of ownership

  • Tracking information

  • Delivery confirmation

Automated tools like Refunzo can make this easier. Their system runs a 21-point check to find discrepancies and flags missing inventory for you. You can either file claims yourself or let them handle it for a capped fee of $5,000.

Key Timeframes to Know

If you notice missing items, check the Contents tab in your shipping plan to compare what you sent with what the fulfillment center received. Before filing a claim, review your Reimbursements report to ensure you haven’t already been compensated.

2. Products Damaged in FBA Warehouses

Damaged inventory in Amazon's fulfillment centers can hurt your profit margins. While Amazon's Multi-Channel Fulfillment (MCF) claims a 99.98% undamaged package delivery rate, incidents still happen. Here's how you can spot, document, and claim reimbursement for damaged items.

Common Causes of Damage

Damage to products often happens during warehouse operations due to:

  • Poor storage conditions

  • Mishandling during picking and packing

  • Issues in the fulfillment process

Frequent handling increases the risk of damage, so using protective packaging and staying on top of monitoring are key.

How to Detect and Document Issues

To minimize losses, focus on early detection and thorough documentation:

  • Review Reports Regularly

    Check Seller Central reports like Inventory Adjustments, Reconciliation, and Returns to identify potential damage.

  • Take Preventive Steps

    Protect your inventory by:

    • Using proper packing materials for fragile items

    • Securing heavy items appropriately

    • Clearly labeling fragile products

Filing Claims: What You Need to Know

As of October 23, 2024, sellers have a 60-day window to file claims. Follow these steps:

  • Gather evidence of the damage

  • Keep detailed records

  • Submit claims within the 60-day period

  • Include photos and supporting documentation

Automating the Process

Automated tools can simplify tracking inventory, flagging damages, and generating claims reports. These tools can save time and ensure no damage goes unnoticed.

How Compensation Works

Amazon calculates reimbursements based on fair market value, recent sales data, comparable listings, and applicable FBA fees. Acting quickly to address damaged inventory helps you recover losses and protect your bottom line.

3. Lost Items in Amazon Warehouses

Lost inventory in Amazon warehouses can quietly eat into your profits, often accounting for 1% to 3% of total sales. Knowing how to track and recover these losses is key to keeping your profit margins intact.

Why Does Inventory Get Lost?

Items can go missing due to warehouse misplacement, scanning errors, system glitches, or handling mistakes. These issues might seem small but can add up quickly.

How to Track Missing Inventory

Amazon's Inventory Adjustment Report is your go-to tool for spotting lost items. It uses reason codes to highlight issues like missing shipments, reconciliation errors, or unaccounted adjustments. Identifying these problems early gives you a head start on recovering your losses.

Using Automated Tools

Tools like Refunzo can automate the process, running 21-point checks to identify lost items and delivering detailed reports to streamline your efforts.

Steps to File Reimbursement Claims

If you find lost inventory, here’s how to file a reimbursement claim:

  • Gather Documentation

    Collect everything Amazon might need, such as shipping manifests, adjustment reports, transaction histories, and cost details.

  • Submit Your Claim

    File your claim through Seller Central. Be thorough - include a clear explanation, supporting documents, ASIN details, and shipment IDs.

  • Follow Up

    Keep an eye on your case. Respond quickly to Amazon's requests, provide any extra documentation, and appeal decisions if needed.

How Successful Are Reimbursement Claims?

In March 2023, services like Getida reported a 63% approval rate for claims. While not guaranteed, these numbers show that persistence pays off.

Tips to Prevent Inventory Loss

Minimize losses by adopting these practices:

  • Perform weekly audits

  • Cross-check reports regularly

  • Use scannable labels for accuracy

  • Take photos of your shipments

  • Keep a detailed tracking spreadsheet

Don’t Miss the Deadline

Amazon gives you an 18-month window to file claims for lost inventory. Acting quickly when you notice discrepancies increases your chances of getting reimbursed. Stay proactive!

4. Untracked Customer Returns

If you're not keeping an eye on customer returns, they can quietly eat into your profits. These unnoticed issues can create gaps in your records and hurt your earnings. Here's a closer look at common problems, their financial impact, and how to address them.

Common Return Tracking Problems

When customers send items back to Amazon FBA warehouses, a few things can go wrong:

  • Amazon often doesn't notify sellers when an item is returned to an FBA warehouse.

  • Standard reports might only show returns after they're fully processed, causing delays.

  • Warehouse staff may misjudge the condition of returned items, restocking damaged products as sellable.

  • Sometimes, returns show up after Amazon's 30-day return window due to processing delays.

The Cost of Untracked Returns

Returns that take longer than 45 days to process or refunds issued without receiving the item back can lead to major revenue losses.

How to Stay on Top of Returns

Amazon's Return Insights tool can help you catch potential issues early. Found under "Manage FBA Inventory", this tool lets you track:

  • Patterns and trends in returns

  • Delays in processing

  • Mishandled items

  • Missing reimbursements

Steps to Handle Discrepancies

  1. Monitor and Document
    Regularly compare return notifications with your inventory records. Use the FBA Customer Returns Report in Seller Central to keep track of details like:

    • Reasons for returns (Amazon has 72 official categories)

    • Processing status

    • Condition of returned items

    • Eligibility for reimbursements

  2. File Claims

    If you spot a discrepancy, file a claim through Seller Central immediately. Make sure to include clear evidence.

How to Avoid Future Problems

Taking proactive steps can help you minimize future return-related losses:

  • Review return reasons regularly to spot patterns and improve your products.

  • Check your packaging to reduce the risk of damage during shipping.

  • Share feedback with suppliers to address recurring quality issues.

Don't Miss Out on Reimbursements

Amazon limits single-item reimbursements to $5,000, so it's especially important to monitor high-value returns. Tools like Refunzo can help by offering a free lifetime reconciliation service with a 21-point system, ensuring you recover every dollar you're owed.

5. Items Disposed Without Permission

Amazon's disposal of inventory without your consent can quietly eat into your profits. It's important to recognize the common scenarios and take steps to safeguard your investment.

Common Disposal Scenarios

Keep these situations in mind during your inventory audits:

  • Items flagged for safety or health concerns

  • Products missing required hazardous materials documentation

  • Inventory deemed unfulfillable for over 60 days

  • Items subject to recalls that aren't resolved within 30 days

The Cost of Auto-Disposal

Automated settings in Seller Central can lead to unexpected losses. The automated unfulfillable setting often defaults to "dispose" instead of "return", which can result in inventory being discarded without your knowledge.

Signs to Watch For

Amazon does send notifications before disposing of inventory, but these alerts aren't always reliable. Keep an eye out for these warning signs:

  • 30-day email alerts and 5-day final notices

  • Sudden inventory adjustments

  • Unexplained changes in stock levels

Documentation You Need

Proper documentation can help you validate your inventory and support claims. Use the following records:

Document Type

Purpose

Key Details to Include

Purchase Orders

Proof of ownership

Quantities, dates, and costs

Shipping Records

Delivery verification

Tracking numbers and receipts

Inventory Reports

Stock tracking

Regular inventory snapshots

Product Documentation

Compliance proof

Safety certificates, Hazmat approvals

How to Secure Reimbursement

If Amazon disposes of your inventory in error, you may qualify for reimbursement. Here's what to do:

  1. Check that the disposal wasn't due to a policy violation.

  2. Collect evidence showing proper inventory management.

  3. Submit your claim within the required timeframe.

  4. Follow up consistently for 30-45 days.

Good documentation and timely claims are key to recovering losses.

Preventing Future Issues

Avoid costly mistakes by staying proactive:

  • Regularly review your automated disposal settings.

  • Ensure hazardous materials documentation is current.

  • Monitor inventory reports for discrepancies.

  • Set reminders for the 60-day unfulfillable threshold.

Tools like Refunzo's free reconciliation service can help by performing automated checks to catch disposal issues early and protect your bottom line.

6. FBA Fee Calculation Errors

FBA fee calculation errors can quietly eat into your profits. Like other inventory issues, these errors often go unnoticed, gradually affecting your margins. On average, unrecovered Amazon FBA fee reimbursements can account for up to 3% of annual revenue.

Common Fee Overcharges

Here are some of the most frequent errors and their impacts:

Error Type

Impact

Detection Method

Dimension Mismatches

Higher storage and shipping fees

Regular Cubiscan verification

Weight Discrepancies

Increased fulfillment costs

Physical product measurement

Category Misclassification

Incorrect referral fees

Category audit

Storage Fee Miscalculations

Extra monthly charges

Inventory report analysis

Identifying Fee Discrepancies

"Amazon charges sellers FBA fees based on the dimensions and weight of their products. These fees cover storage, picking, packing, and shipping. Errors in logging dimensions or weights can lead to inflated fees."

To catch these issues, keep an eye on your monthly FBA Fee Reports. Verify product dimensions and weights using tools like Cubiscan at least twice a year. Implement SKU tracking to quickly identify any inconsistencies.

Recovery Process

If you spot fee errors, follow these steps to recover your money:

  • Document the correct product specifications.

  • Collect evidence of overcharges from your FBA reports.

  • Submit claims within the 90-day window.

  • Track each case until it’s resolved.

Prevention Strategies

Avoid future errors by taking these precautions:

  • Double-check product dimensions and weights when listing items.

  • Ensure categories are assigned correctly to avoid referral fee mistakes.

  • Review return-related fees for accuracy.

  • Regularly audit storage fee calculations.

Automated Solutions

Fee analysis tools can save you time and effort. Services like Refunzo’s free reconciliation tool automatically flag fee discrepancies, helping you address errors early.

Amazon’s reimbursement system works best when you provide clear, accurate evidence and stay persistent. Regular monitoring and quick action on fee issues can protect your profit margins. Incorporating fee audits into your routine ensures you’re not leaving money on the table.

7. Wrong Size and Weight Charges

Size and weight errors can quietly chip away at FBA profits, often leading to losses of 1%-3% without sellers even realizing it.

Common Measurement Issues and Their Impact

Amazon's system sometimes misclassifies product dimensions, leading to inflated fees. For instance, one seller's ASIN was recorded at 21.3 x 16.69 x 7.01 inches instead of its actual size of 14.57 x 11.42 x 6.89 inches. This kind of mistake can push items into higher fee tiers due to the US dimensional weight factor of 139.

How to Spot and Verify Errors

Getting your product measurements right is key to avoiding unnecessary fees and protecting your profit margins. Here’s how you can identify and address these issues:

  • Download the Fee Preview report.

  • Compare your product's actual dimensions with Amazon's recorded data.

  • Document any errors with clear photos.

  • Use tools like AMZAlert to verify dimensions.

Filing a Claim

"Sellers now have 90 days from the date a fee was charged to gather the required documentation and ask Amazon to investigate whether its measurements of a product are accurate." - News_Amazon

When you notice a discrepancy, you’ll need to act quickly. Submit your claim with all the necessary documentation and follow these steps to ensure a smooth process.

Steps for Resolution

Amazon allows up to 20 remeasurement requests each month. Here’s what you should do:

  1. Take clear photos of your product on a scale and next to a measuring tape.

  2. Submit your claim within the 90-day window.

  3. Keep track of your case ID and respond promptly to any follow-up requests.

  4. If your claim is approved, Amazon will refund the overcharges and update the product's measurements.

Preventing Future Issues

To minimize future problems, focus on packaging and record-keeping. Make sure to:

  • Design packaging that fits Amazon’s size tiers.

  • Keep accurate records of your product dimensions (length, width, height), unit weight (including packaging), and dimensional weight calculations.

Regularly reviewing your data and acting quickly when discrepancies arise can go a long way in protecting your profits. This is especially important since 73% of Amazon sellers rely on FBA.

8. Mixed Inventory Problems

When Amazon combines your products with those from other sellers, it can lead to financial losses and tracking headaches. These "commingled inventory" issues might seem minor, but they can quietly eat into your profits if left unchecked.

What Are the Risks of Commingled Inventory?

If you use manufacturer barcodes instead of Amazon-specific labels, your products join a shared inventory pool. While this might simplify logistics, it opens the door to several problems that can directly affect your business.

Risk Factor

Potential Impact

Counterfeit Products

Account suspension and damage to your brand's reputation

Quality Control

Difficulty verifying product authenticity and condition

Inventory Tracking

Inaccurate stock levels

Customer Trust

Dissatisfied customers due to counterfeit or defective items

How It Can Hurt Your Finances

These risks don't just create logistical headaches - they can hit your wallet hard. Here's how:

  • Lost sales from bad reviews

  • Costs tied to account suspensions

  • Damage to your brand's reputation

  • Increased customer service expenses to address complaints

How to Avoid These Issues

  • Enroll in Amazon Brand Registry

    This program gives you more control over your listings and helps block counterfeit products.

  • Leverage Amazon Project Zero

    Use this tool to identify and remove counterfeit listings before they harm your brand.

  • Stick to Amazon-Specific Labels

    Label your products with unique Amazon barcodes to keep them separate and ensure quality control.

Tips for Better Inventory Management

  • Regularly check inventory levels using Amazon's reporting tools.

  • Keep detailed records of product specs and authenticity markers.

  • Track shipments carefully and maintain thorough documentation.

  • Quickly address any customer concerns about product authenticity.

9. Missing Multi-Channel Orders

Handling inventory across multiple sales channels can lead to tracking issues and costly errors. Retailers face a staggering $634 billion loss each year due to out-of-stock items, while overstocks account for $471.9 billion in losses. These problems often stem from disconnected systems and inconsistent inventory updates.

Why Orders Go Missing

The main culprits behind missing orders include poor system integration and syncing errors. Specific issues like selling outdated stock, delays in order fulfillment, and incorrect inventory counts are common.

How to Fix Tracking Issues

The key to solving these problems lies in using a centralized system that connects all your sales channels. Tools like Sellbrite are designed to help with listing management, inventory syncing, and order fulfillment across platforms.

Real-time inventory updates are a game-changer. They prevent overselling and keep stock levels accurate. Emily Rohr, Founder of Rohr Remedy, shares her experience:

"In using TradeGecko, we've definitely reduced the amount of time we spend on inventory, and that's made a massive difference in us being able to supply our customers. We're getting more orders because we're more streamlined."

With the right tools, you can minimize errors and recover lost revenue more efficiently.

Steps to Recover Lost Revenue

If you’ve already lost revenue due to missing orders, here’s how to address it:

  1. Keep detailed records of purchases and shipping documents.

  2. Regularly check shipping queues to spot missing items.

  3. Go to the 'Manage FBA Shipments' page and choose 'Reconcile' to file a reimbursement claim.

  4. Provide purchase invoices (with pricing details removed) as proof to support your claim.

You can also use automated reconciliation tools to speed up this process.

Tips to Prevent Future Issues

  • Use CSV templates to update product data consistently across all channels.

  • Set up clear communication protocols between departments.

  • Adopt integrated shipping solutions to streamline order fulfillment.

  • Regularly review and refine your inventory management strategies.

10. Stuck Inventory Issues

Stranded inventory in Amazon FBA warehouses can lead to extra storage fees and missed sales opportunities. This happens when items become unsellable due to listing or fulfillment errors.

Common Causes of Stuck Inventory

There are several reasons why inventory might get stuck:

  • Listing Errors: Missing or incorrect product details.

  • Pricing Problems: Items priced outside Amazon's allowed range.

  • Restricted ASINs: Products flagged as restricted upon arrival.

  • Account Suspensions: Temporary restrictions on your selling account.

  • Product Expiration: Items nearing or past their expiration date.

These issues not only block sales but also increase storage costs and operational expenses. If stranded inventory isn’t resolved within 30 days, Amazon may remove or dispose of it automatically. This can hurt your Inventory Performance Index (IPI) and limit your future storage capacity.

Financial Impact and Prevention

Addressing stranded inventory quickly is essential to avoid losing revenue. Here’s how you can stay ahead:

  • Monitor Daily: Regularly check the "Fix Stranded Inventory" section in Seller Central.

  • Adjust Settings: Configure automatic actions to "Return units to me" instead of disposal.

  • Track Key Details: Keep records of expiration dates, compliance requirements, pricing limits, and reconciliation reports.

Recovery Process

If you identify stranded inventory, take these steps:

  1. Check the Stranded Inventory Report to pinpoint the issue.

  2. Resolve the problem within 30 days.

  3. Document actions taken for potential reimbursement claims.

For more complex situations, consider using automated tools like Refunzo’s 21-point reconciliation checks to uncover reimbursement opportunities.

Best Practices for Prevention

To reduce the chances of inventory getting stuck, follow these tips:

  • Conduct thorough research before listing any product.

  • Double-check listing details before shipping items to FBA.

  • Keep product prices within Amazon’s allowed range.

  • Maintain active listings even when stock runs out to handle returns.

  • Set up alerts for listing issues to catch problems early.

Proactive management can save you time, money, and effort while keeping your inventory in good standing.

Conclusion

Keeping track of FBA inventory discrepancies is crucial for safeguarding your Amazon business. By understanding common inventory issues, sellers can adopt practical strategies to protect their revenue and improve efficiency.

Key Recovery Steps

Focus on these five areas during regular reconciliation:

  • Shipment verification

  • Inventory tracking

  • Payment reconciliation

  • Fee assessment

  • Refund monitoring

These steps, when paired with the right tools, create an effective approach to managing inventory challenges.

Using Technology for Better Results

Tools like Refunzo's 21-point system simplify the process of spotting and recovering lost funds. Doug Joyce highlights its effectiveness:

"Refunzo is great. Have found me 10's of thousands of dollars. Professional and efficient."

Affordable Recovery Options

Approach

Cost

Benefits

Best For

Self-managed

Free

Full control, no additional fees

Sellers with resources

Managed Service

15% of recovery (max $5,000)

Saves time, handled by experts

High-volume sellers

These options offer flexibility and have helped many sellers recover funds successfully.

Real-World Results

The value of professional reconciliation services is clear from seller feedback. Robert Cuttler shares his experience:

"I mainly use Refunzo for finding inventory that was lost or damaged at Amazon's warehouse and they are worth every penny of the commission they charge. I will continue using them for a long time."

Next Steps

Boost your recovery efforts by:

  • Automating reconciliation: Set up regular checks to catch discrepancies.

  • Keeping records: Track all inventory movements meticulously.

  • Acting quickly: Stay within Amazon's timeframes for claims.

  • Staying updated: Follow Amazon’s latest reimbursement policies.

These actions can help you stay ahead and recover funds efficiently.

Related posts

Stay updated by subscribing
to our newsletter.

Stay informed and up-to-date with the latest news and updates

from our company by subscribing to our newsletter.